SNP Detail For rs1500251
1.Mapping Information
Human SNP ID rs1500251
Human chromosome chr5
Human SNP position 99257749
Pig chromosome chr2
Pig SNP position 109371606
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
Region5q21.1
Chromosome idchr5
Chromosome position99257749
Reported geneCHD1
Mapped geneLOC102724810 - LOC100652833
Upstream gene id102724810
Downstream gene id100652833
SNP gene ids
Upstream gene distance253813
Downstream gene distance264265
SNP risk allelers1500251-A
SNPsrs1500251
Merged0
SNP id current1500251
Contextintergenic_variant
Intergenic1
Allele frequency0.2
P value0.000009
Pvalue mlog5.04575749056067
P value text(Age 20-81 years)
Or beta0.0545
%95 Ci[0.031-0.078] unit decrease
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127