Human SNP ID | rs1500251 |
---|---|
Human chromosome | chr5 |
Human SNP position | 99257749 |
Pig chromosome | chr2 |
Pig SNP position | 109371606 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (Mean PAL) |
Initial sample | up to 4,032 European ancestry individuals |
Replication sample | NA |
Region | 5q21.1 |
Chromosome id | chr5 |
Chromosome position | 99257749 |
Reported gene | CHD1 |
Mapped gene | LOC102724810 - LOC100652833 |
Upstream gene id | 102724810 |
Downstream gene id | 100652833 |
SNP gene ids | |
Upstream gene distance | 253813 |
Downstream gene distance | 264265 |
SNP risk allele | rs1500251-A |
SNPs | rs1500251 |
Merged | 0 |
SNP id current | 1500251 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Age 20-81 years) |
Or beta | 0.0545 |
%95 Ci | [0.031-0.078] unit decrease |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002127 |