SNP Detail For rs149914843
1.Mapping Information
Human SNP ID rs149914843
Human chromosome chr11
Human SNP position 59362639
Pig chromosome chr2
Pig SNP position 11713507
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region11q12.1
Chromosome idchr11
Chromosome position59362639
Reported geneNR
Mapped geneLOC105369316 - OR5AN1
Upstream gene id105369316
Downstream gene id390195
SNP gene ids
Upstream gene distance77944
Downstream gene distance1820
SNP risk allelers149914843-?
SNPsrs149914843
Merged
SNP id current149914843
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000000003
Pvalue mlog8.52287874528033
P value text(Japanese)
Or beta1.3074
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956