SNP Detail For rs1498232
1.Mapping Information
Human SNP ID rs1498232
Human chromosome chr1
Human SNP position 29961104
Pig chromosome chr6
Pig SNP position 80460003
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region1p35.2
Chromosome idchr1
Chromosome position29961104
Reported geneintergenic
Mapped geneLOC101928460 - LOC101929406
Upstream gene id101928460
Downstream gene id101929406
SNP gene ids
Upstream gene distance610990
Downstream gene distance52848
SNP risk allelers1498232-T
SNPsrs1498232
Merged0
SNP id current1498232
Contextintergenic_variant
Intergenic1
Allele frequency0.296
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.069
%95 Ci[1.046-1.093]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region1p35.2
Chromosome idchr1
Chromosome position29961104
Reported geneNR
Mapped geneLOC101928460 - LOC101929406
Upstream gene id101928460
Downstream gene id101929406
SNP gene ids
Upstream gene distance610990
Downstream gene distance52848
SNP risk allelers1498232-T
SNPsrs1498232
Merged0
SNP id current1498232
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000000007
Pvalue mlog9.15490195998574
P value text
Or beta1.07
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048