Human SNP ID | rs1498232 |
---|---|
Human chromosome | chr1 |
Human SNP position | 29961104 |
Pig chromosome | chr6 |
Pig SNP position | 80460003 |
PubMed ID | 25056061 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25056061 |
Study | Biological insights from 108 schizophrenia-associated genetic loci. |
Disease/Trait | Schizophrenia |
Initial sample | 32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls |
Replication sample | 1,513 European ancestry cases, 66,236 European ancestry controls |
Region | 1p35.2 |
Chromosome id | chr1 |
Chromosome position | 29961104 |
Reported gene | intergenic |
Mapped gene | LOC101928460 - LOC101929406 |
Upstream gene id | 101928460 |
Downstream gene id | 101929406 |
SNP gene ids | |
Upstream gene distance | 610990 |
Downstream gene distance | 52848 |
SNP risk allele | rs1498232-T |
SNPs | rs1498232 |
Merged | 0 |
SNP id current | 1498232 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.296 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.069 |
%95 Ci | [1.046-1.093] |
Platform | Affymetrix, Illumina [9005918] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST002539 |
PubMed ID | 26198764 |
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26198764 |
Study | Genome-wide association study of schizophrenia in Ashkenazi Jews. |
Disease/Trait | Schizophrenia |
Initial sample | 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls |
Replication sample | NA |
Region | 1p35.2 |
Chromosome id | chr1 |
Chromosome position | 29961104 |
Reported gene | NR |
Mapped gene | LOC101928460 - LOC101929406 |
Upstream gene id | 101928460 |
Downstream gene id | 101929406 |
SNP gene ids | |
Upstream gene distance | 610990 |
Downstream gene distance | 52848 |
SNP risk allele | rs1498232-T |
SNPs | rs1498232 |
Merged | 0 |
SNP id current | 1498232 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000007 |
Pvalue mlog | 9.15490195998574 |
P value text | |
Or beta | 1.07 |
%95 Ci | [NR] |
Platform | Illumina [7158791] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST003048 |