SNP Detail For rs149565105
1.Mapping Information
Human SNP ID rs149565105
Human chromosome chr6
Human SNP position 160457046
Pig chromosome chr1
Pig SNP position 8782481
2.Annotation Information
PubMed ID26377243
JournalJ Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26377243
StudyGenome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study.
Disease/TraitLipoprotein (a) levels
Initial sample2,895 African American individuals
Replication sampleNA
Region6q25.3
Chromosome idchr6
Chromosome position160457046
Reported geneSLC22A1, SLC22A2, SLC22A3
Mapped geneSLC22A3 - LPAL2
Upstream gene id6581
Downstream gene id80350
SNP gene ids
Upstream gene distance4465
Downstream gene distance9509
SNP risk allelers149565105-A
SNPsrs149565105
Merged
SNP id current149565105
Contextintron_variant
Intergenic1
Allele frequency0.02
P value2E-34
Pvalue mlog33.698970004336
P value text
Or beta0.78
%95 Ci[0.66-0.9] unit increase
PlatformAffymetrix [up to 38000000] (imputed)
CNVN
Mapped traitlipoprotein A measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006925
Study accessionGCST003127