Human SNP ID | rs149565105 |
---|---|
Human chromosome | chr6 |
Human SNP position | 160457046 |
Pig chromosome | chr1 |
Pig SNP position | 8782481 |
PubMed ID | 26377243 |
---|---|
Journal | J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26377243 |
Study | Genome- and exome-wide association study of serum lipoprotein (a) in the Jackson Heart Study. |
Disease/Trait | Lipoprotein (a) levels |
Initial sample | 2,895 African American individuals |
Replication sample | NA |
Region | 6q25.3 |
Chromosome id | chr6 |
Chromosome position | 160457046 |
Reported gene | SLC22A1, SLC22A2, SLC22A3 |
Mapped gene | SLC22A3 - LPAL2 |
Upstream gene id | 6581 |
Downstream gene id | 80350 |
SNP gene ids | |
Upstream gene distance | 4465 |
Downstream gene distance | 9509 |
SNP risk allele | rs149565105-A |
SNPs | rs149565105 |
Merged | |
SNP id current | 149565105 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.02 |
P value | 2E-34 |
Pvalue mlog | 33.698970004336 |
P value text | |
Or beta | 0.78 |
%95 Ci | [0.66-0.9] unit increase |
Platform | Affymetrix [up to 38000000] (imputed) |
CNV | N |
Mapped trait | lipoprotein A measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006925 |
Study accession | GCST003127 |