SNP Detail For rs149502810
1.Mapping Information
Human SNP ID rs149502810
Human chromosome chr11
Human SNP position 36265280
Pig chromosome chr2
Pig SNP position 27143902
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region11p13
Chromosome idchr11
Chromosome position36265280
Reported geneNR
Mapped geneLDLRAD3 - COMMD9
Upstream gene id143458
Downstream gene id29099
SNP gene ids
Upstream gene distance33144
Downstream gene distance7012
SNP risk allelers149502810-?
SNPsrs149502810
Merged
SNP id current149502810
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(AA)
Or beta1.9023
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957