SNP Detail For rs149358103
1.Mapping Information
Human SNP ID rs149358103
Human chromosome chr6
Human SNP position 113586847
Pig chromosome chr1
Pig SNP position 89683679
2.Annotation Information
PubMed ID25760438
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25760438
StudyFirst genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls
Replication sampleNA
Region6q21
Chromosome idchr6
Chromosome position113586847
Reported geneSOCS5P5, MARCKS
Mapped geneRPS27AP11 - LOC101927686
Upstream gene id728590
Downstream gene id101927686
SNP gene ids
Upstream gene distance4848
Downstream gene distance36688
SNP risk allelers149358103-?
SNPsrs149358103
Merged0
SNP id current149358103
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.58
%95 Ci[0.33-0.83] unit increase
PlatformIllumina [1075436] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002806