Human SNP ID | rs149358103 |
---|---|
Human chromosome | chr6 |
Human SNP position | 113586847 |
Pig chromosome | chr1 |
Pig SNP position | 89683679 |
PubMed ID | 25760438 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25760438 |
Study | First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls |
Replication sample | NA |
Region | 6q21 |
Chromosome id | chr6 |
Chromosome position | 113586847 |
Reported gene | SOCS5P5, MARCKS |
Mapped gene | RPS27AP11 - LOC101927686 |
Upstream gene id | 728590 |
Downstream gene id | 101927686 |
SNP gene ids | |
Upstream gene distance | 4848 |
Downstream gene distance | 36688 |
SNP risk allele | rs149358103-? |
SNPs | rs149358103 |
Merged | 0 |
SNP id current | 149358103 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.58 |
%95 Ci | [0.33-0.83] unit increase |
Platform | Illumina [1075436] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002806 |