Human SNP ID | rs148992089 |
---|---|
Human chromosome | chr5 |
Human SNP position | 158952834 |
Pig chromosome | chr16 |
Pig SNP position | 70311061 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 158952834 |
Reported gene | EBF1 |
Mapped gene | EBF1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1879 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs148992089-T |
SNPs | rs148992089 |
Merged | |
SNP id current | 148992089 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (EA) |
Or beta | 0.7506 |
%95 Ci | [0.46-1.04] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |