SNP Detail For rs1487630
1.Mapping Information
Human SNP ID rs1487630
Human chromosome chr4
Human SNP position 38334202
Pig chromosome chr8
Pig SNP position 31251004
2.Annotation Information
PubMed ID23266558
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266558
StudyA genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population.
Disease/TraitCrohn__s disease
Initial sample372 Japanese ancestry cases,3,389 Japanese ancestry controls
Replication sampleUp to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls
Region4p14
Chromosome idchr4
Chromosome position38334202
Reported geneTBC1D1
Mapped geneLOC105374410
Upstream gene id
Downstream gene id
SNP gene ids105374410
Upstream gene distance
Downstream gene distance
SNP risk allelers1487630-T
SNPsrs1487630
Merged0
SNP id current1487630
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000000001
Pvalue mlog11
P value text
Or beta1.33
%95 Ci[1.22-1.44]
PlatformIllumina [4929034] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001785