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SNP Detail For rs148359873
1.Mapping Information
| Human SNP ID | rs148359873 |
|---|---|
| Human chromosome | chr9 |
| Human SNP position | 31450668 |
| Pig chromosome | chr10 |
| Pig SNP position | 39261329 |
2.Annotation Information
| PubMed ID | 24159190 |
|---|---|
| Journal | Eur Heart J |
| Link | www.ncbi.nlm.nih.gov/pubmed/24159190 |
| Study | Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. |
| Disease/Trait | Serum dimethylarginine levels (asymmetric/symetric ratio) |
| Initial sample | 5110 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 31450668 |
| Reported gene | NR |
| Mapped gene | LINC01243 - LOC105376010 |
| Upstream gene id | 101929620 |
| Downstream gene id | 105376010 |
| SNP gene ids | |
| Upstream gene distance | 69178 |
| Downstream gene distance | 127950 |
| SNP risk allele | rs148359873-T |
| SNPs | rs148359873 |
| Merged | 0 |
| SNP id current | 148359873 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.03 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | |
| Or beta | 0.342 |
| %95 Ci | [0.2-0.49] unit decrease |
| Platform | Affymetrix, Illumina [10085758] (imputed) |
| CNV | N |
| Mapped trait | serum dimethylarginine measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005418 |
| Study accession | GCST002242 |
| PubMed ID | 24159190 |
| Journal | Eur Heart J |
| Link | www.ncbi.nlm.nih.gov/pubmed/24159190 |
| Study | Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. |
| Disease/Trait | Symmetrical dimethylarginine levels |
| Initial sample | 5110 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 31450668 |
| Reported gene | NR |
| Mapped gene | LINC01243 - LOC105376010 |
| Upstream gene id | 101929620 |
| Downstream gene id | 105376010 |
| SNP gene ids | |
| Upstream gene distance | 69178 |
| Downstream gene distance | 127950 |
| SNP risk allele | rs148359873-T |
| SNPs | rs148359873 |
| Merged | 0 |
| SNP id current | 148359873 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.03 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | |
| Or beta | 0.361 |
| %95 Ci | [0.21-0.51] unit increase |
| Platform | Affymetrix, Illumina [10085758] (imputed) |
| CNV | N |
| Mapped trait | serum dimethylarginine measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005418 |
| Study accession | GCST002239 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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