SNP Detail For rs148258131
1.Mapping Information
Human SNP ID rs148258131
Human chromosome chr3
Human SNP position 132145292
Pig chromosome chr13
Pig SNP position 41953
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region3q22.1
Chromosome idchr3
Chromosome position132145292
Reported geneNR
Mapped geneCPNE4
Upstream gene id
Downstream gene id
SNP gene ids131034
Upstream gene distance
Downstream gene distance
SNP risk allelers148258131-?
SNPsrs148258131
Merged
SNP id current148258131
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Japanese)
Or beta0.7519
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957