SNP Detail For rs148215758
1.Mapping Information
Human SNP ID rs148215758
Human chromosome chrX
Human SNP position 54017674
Pig chromosome chrX
Pig SNP position 52204952
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
RegionXp11.22
Chromosome idchrX
Chromosome position54017674
Reported geneNR
Mapped genePHF8
Upstream gene id
Downstream gene id
SNP gene ids23133
Upstream gene distance
Downstream gene distance
SNP risk allelers148215758-?
SNPsrs148215758
Merged
SNP id current148215758
Contextsynonymous_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(Native Hawaiian)
Or beta1.1057
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957