Human SNP ID | rs148203517 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31356323 |
Pig chromosome | chr7 |
Pig SNP position | 24750611 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Atopic dermatitis |
Initial sample | 2,079 European ancestry cases, 3,867 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31356323 |
Reported gene | HLA-C, HLA-B, MICA |
Mapped gene | HLA-B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3106 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs148203517-T |
SNPs | rs148203517 |
Merged | 1 |
SNP id current | 148203517 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.305 |
%95 Ci | [1.239-1.375] |
Platform | Affymetrix, Illumina, Perlegen [up to 5493100] (imputed) |
CNV | N |
Mapped trait | atopic eczema |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274 |
Study accession | GCST002737 |