SNP Detail For rs148203517
1.Mapping Information
Human SNP ID rs148203517
Human chromosome chr6
Human SNP position 31356323
Pig chromosome chr7
Pig SNP position 24750611
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitAtopic dermatitis
Initial sample2,079 European ancestry cases, 3,867 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31356323
Reported geneHLA-C, HLA-B, MICA
Mapped geneHLA-B
Upstream gene id
Downstream gene id
SNP gene ids3106
Upstream gene distance
Downstream gene distance
SNP risk allelers148203517-T
SNPsrs148203517
Merged1
SNP id current148203517
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.305
%95 Ci[1.239-1.375]
PlatformAffymetrix, Illumina, Perlegen [up to 5493100] (imputed)
CNVN
Mapped traitatopic eczema
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274
Study accessionGCST002737