SNP Detail For rs1480380
1.Mapping Information
Human SNP ID rs1480380
Human chromosome chr6
Human SNP position 32945469
Pig chromosome chr7
Pig SNP position 29495769
2.Annotation Information
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32945469
Reported geneNR
Mapped geneHLA-DMB - HLA-DMA
Upstream gene id3109
Downstream gene id3108
SNP gene ids
Upstream gene distance4399
Downstream gene distance3145
SNP risk allelers1480380-C
SNPsrs1480380
Merged0
SNP id current1480380
Contextintron_variant
Intergenic1
Allele frequency0.908
P value0.0000006
Pvalue mlog6.22184874961635
P value text(Modelling analysis)
Or beta
%95 Ci
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877
PubMed ID21323541
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/21323541
StudyRisk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.
Disease/TraitIdiopathic membranous nephropathy
Initial sample556 European ancestry cases, 2,338 European ancestry controls
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32945469
Reported geneintergenic
Mapped geneHLA-DMB - HLA-DMA
Upstream gene id3109
Downstream gene id3108
SNP gene ids
Upstream gene distance4399
Downstream gene distance3145
SNP risk allelers1480380-T
SNPsrs1480380
Merged0
SNP id current1480380
Contextintron_variant
Intergenic1
Allele frequency0.0877
P value4E-39
Pvalue mlog38.397940008672
P value text
Or beta3.05
%95 Ci[NR]
PlatformIllumina [242824]
CNVN
Mapped traitmembranous glomerulonephritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004254
Study accessionGCST000984