Human SNP ID | rs1478897 |
---|---|
Human chromosome | chr8 |
Human SNP position | 11537723 |
Pig chromosome | chr14 |
Pig SNP position | 15913177 |
PubMed ID | 26316170 |
---|---|
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/26316170 |
Study | Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 661 European ancestry cases, 487 European ancestry controls |
Replication sample | 4,467 European ancestry cases, 9,114 European ancestry controls |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 11537723 |
Reported gene | FAM167A, BLK, XKR6, PINX1, MTMR9, SLC35G5, TDH, C8orf12, LINC00208 |
Mapped gene | BLK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 640 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1478897-T |
SNPs | rs1478897 |
Merged | |
SNP id current | 1478897 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.337 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.56 |
%95 Ci | [NR] |
Platform | Affymetrix [up to 700598] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003103 |