SNP Detail For rs1478897
1.Mapping Information
Human SNP ID rs1478897
Human chromosome chr8
Human SNP position 11537723
Pig chromosome chr14
Pig SNP position 15913177
2.Annotation Information
PubMed ID26316170
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26316170
StudyIdentification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.
Disease/TraitSystemic lupus erythematosus
Initial sample661 European ancestry cases, 487 European ancestry controls
Replication sample4,467 European ancestry cases, 9,114 European ancestry controls
Region8p23.1
Chromosome idchr8
Chromosome position11537723
Reported geneFAM167A, BLK, XKR6, PINX1, MTMR9, SLC35G5, TDH, C8orf12, LINC00208
Mapped geneBLK
Upstream gene id
Downstream gene id
SNP gene ids640
Upstream gene distance
Downstream gene distance
SNP risk allelers1478897-T
SNPsrs1478897
Merged
SNP id current1478897
Contextintron_variant
Intergenic0
Allele frequency0.337
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.56
%95 Ci[NR]
PlatformAffymetrix [up to 700598]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003103