SNP Detail For rs1476442
1.Mapping Information
Human SNP ID rs1476442
Human chromosome chr7
Human SNP position 91643029
Pig chromosome chr9
Pig SNP position 78403163
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region7q21.2
Chromosome idchr7
Chromosome position91643029
Reported geneMTERF
Mapped geneLOC105375393 - MTERF1
Upstream gene id105375393
Downstream gene id7978
SNP gene ids
Upstream gene distance86747
Downstream gene distance229847
SNP risk allelers1476442-C
SNPsrs1476442
Merged0
SNP id current1476442
Contextintron_variant
Intergenic1
Allele frequency0.221
P value0.000003
Pvalue mlog5.52287874528033
P value text(LDL )
Or beta0.02
%95 Ci[NR] mg/dL increase
PlatformIllumina [899892]
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST001762