SNP Detail For rs147620864
1.Mapping Information
Human SNP ID rs147620864
Human chromosome chr2
Human SNP position 47459393
Pig chromosome chr3
Pig SNP position 99074914
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position47459393
Reported geneMSH2
Mapped geneMSH2
Upstream gene id
Downstream gene id
SNP gene ids4436
Upstream gene distance
Downstream gene distance
SNP risk allelers147620864-G
SNPsrs147620864
Merged0
SNP id current147620864
Contextintron_variant
Intergenic0
Allele frequency0.998
P value0.000005
Pvalue mlog5.30102999566398
P value text(AA)
Or beta0.315
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264