SNP Detail For rs1475010
1.Mapping Information
Human SNP ID rs1475010
Human chromosome chr14
Human SNP position 25667405
Pig chromosome chr7
Pig SNP position 78849598
2.Annotation Information
PubMed ID25133637
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25133637
StudyGenome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults.
Disease/TraitOverweight status
Initial sample531 Bangladeshi ancestry overweight females, 1,269 Bangladeshi ancestry normal weight females, 338 Bangladeshi ancestry overweight males, 1,106 Bangladeshi ancestry normal weight males
Replication sampleNA
Region14q12
Chromosome idchr14
Chromosome position25667405
Reported geneSTXBP6, NOVA1
Mapped geneHMGN2P6 - LOC105370416
Upstream gene id643872
Downstream gene id105370416
SNP gene ids
Upstream gene distance399959
Downstream gene distance160376
SNP risk allelers1475010-C
SNPsrs1475010
Merged0
SNP id current1475010
Contextintergenic_variant
Intergenic1
Allele frequency0.307
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta0.06
%95 Ci[0.036-0.084] unit increase
PlatformIllumina [1208102] (imputed)
CNVN
Mapped traitoverweight body mass index status
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005935
Study accessionGCST002570