Human SNP ID | rs1475010 |
---|---|
Human chromosome | chr14 |
Human SNP position | 25667405 |
Pig chromosome | chr7 |
Pig SNP position | 78849598 |
PubMed ID | 25133637 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25133637 |
Study | Genome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults. |
Disease/Trait | Overweight status |
Initial sample | 531 Bangladeshi ancestry overweight females, 1,269 Bangladeshi ancestry normal weight females, 338 Bangladeshi ancestry overweight males, 1,106 Bangladeshi ancestry normal weight males |
Replication sample | NA |
Region | 14q12 |
Chromosome id | chr14 |
Chromosome position | 25667405 |
Reported gene | STXBP6, NOVA1 |
Mapped gene | HMGN2P6 - LOC105370416 |
Upstream gene id | 643872 |
Downstream gene id | 105370416 |
SNP gene ids | |
Upstream gene distance | 399959 |
Downstream gene distance | 160376 |
SNP risk allele | rs1475010-C |
SNPs | rs1475010 |
Merged | 0 |
SNP id current | 1475010 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.307 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.036-0.084] unit increase |
Platform | Illumina [1208102] (imputed) |
CNV | N |
Mapped trait | overweight body mass index status |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005935 |
Study accession | GCST002570 |