Human SNP ID | rs1471403 |
---|---|
Human chromosome | chr4 |
Human SNP position | 87854091 |
Pig chromosome | chr8 |
Pig SNP position | 140404543 |
PubMed ID | 19801982 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19801982 |
Study | Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. |
Disease/Trait | Bone mineral density (spine) |
Initial sample | 19,195 European ancestry individuals |
Replication sample | NA |
Region | 4q22.1 |
Chromosome id | chr4 |
Chromosome position | 87854091 |
Reported gene | MEPE |
Mapped gene | MEPE - HSP90AB3P |
Upstream gene id | 56955 |
Downstream gene id | 3327 |
SNP gene ids | |
Upstream gene distance | 7274 |
Downstream gene distance | 37657 |
SNP risk allele | rs1471403-T |
SNPs | rs1471403 |
Merged | 0 |
SNP id current | 1471403 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.34 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.05-0.09] s.d. increase |
Platform | Affymetrix, Illumina [2543686] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000494 |
PubMed ID | 19801982 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19801982 |
Study | Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 19,195 European ancestry individuals |
Replication sample | NA |
Region | 4q22.1 |
Chromosome id | chr4 |
Chromosome position | 87854091 |
Reported gene | MEPE |
Mapped gene | MEPE - HSP90AB3P |
Upstream gene id | 56955 |
Downstream gene id | 3327 |
SNP gene ids | |
Upstream gene distance | 7274 |
Downstream gene distance | 37657 |
SNP risk allele | rs1471403-T |
SNPs | rs1471403 |
Merged | 0 |
SNP id current | 1471403 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.34 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.04-0.08] s.d. increase |
Platform | Affymetrix, Illumina [2543686] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000495 |