SNP Detail For rs1471403
1.Mapping Information
Human SNP ID rs1471403
Human chromosome chr4
Human SNP position 87854091
Pig chromosome chr8
Pig SNP position 140404543
2.Annotation Information
PubMed ID19801982
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19801982
StudyTwenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.
Disease/TraitBone mineral density (spine)
Initial sample19,195 European ancestry individuals
Replication sampleNA
Region4q22.1
Chromosome idchr4
Chromosome position87854091
Reported geneMEPE
Mapped geneMEPE - HSP90AB3P
Upstream gene id56955
Downstream gene id3327
SNP gene ids
Upstream gene distance7274
Downstream gene distance37657
SNP risk allelers1471403-T
SNPsrs1471403
Merged0
SNP id current1471403
Contextintergenic_variant
Intergenic1
Allele frequency0.34
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.07
%95 Ci[0.05-0.09] s.d. increase
PlatformAffymetrix, Illumina [2543686] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000494
PubMed ID19801982
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19801982
StudyTwenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.
Disease/TraitBone mineral density (hip)
Initial sample19,195 European ancestry individuals
Replication sampleNA
Region4q22.1
Chromosome idchr4
Chromosome position87854091
Reported geneMEPE
Mapped geneMEPE - HSP90AB3P
Upstream gene id56955
Downstream gene id3327
SNP gene ids
Upstream gene distance7274
Downstream gene distance37657
SNP risk allelers1471403-T
SNPsrs1471403
Merged0
SNP id current1471403
Contextintergenic_variant
Intergenic1
Allele frequency0.34
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta0.06
%95 Ci[0.04-0.08] s.d. increase
PlatformAffymetrix, Illumina [2543686] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000495