SNP Detail For rs146978549
1.Mapping Information
Human SNP ID rs146978549
Human chromosome chr12
Human SNP position 16896978
Pig chromosome chr5
Pig SNP position 59201716
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region12p12.3
Chromosome idchr12
Chromosome position16896978
Reported geneIntergenic
Mapped geneLOC105369677
Upstream gene id
Downstream gene id
SNP gene ids105369677
Upstream gene distance
Downstream gene distance
SNP risk allelers146978549-G
SNPsrs146978549
Merged0
SNP id current146978549
Contextintergenic_variant
Intergenic0
Allele frequency0.999
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.423
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264