SNP Detail For rs146939578
1.Mapping Information
Human SNP ID rs146939578
Human chromosome chr6
Human SNP position 130525260
Pig chromosome chr1
Pig SNP position 36207685
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region6q23.1
Chromosome idchr6
Chromosome position130525260
Reported geneIntergenic
Mapped geneTMEM200A - LOC105378002
Upstream gene id114801
Downstream gene id105378002
SNP gene ids
Upstream gene distance81836
Downstream gene distance193970
SNP risk allelers146939578-A
SNPsrs146939578
Merged0
SNP id current146939578
Contextintergenic_variant
Intergenic1
Allele frequency0.991
P value0.000004
Pvalue mlog5.39794000867203
P value text(AA)
Or beta0.41
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262