SNP Detail For rs1469170
1.Mapping Information
Human SNP ID rs1469170
Human chromosome chr11
Human SNP position 110870290
Pig chromosome chr9
Pig SNP position 43505771
2.Annotation Information
PubMed ID23717212
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23717212
StudyImputation-based meta-analysis of severe malaria in three African populations.
Disease/TraitMalaria
Initial sample5,425 African ancestry cases, 6,891 African ancestry controls
Replication sampleNA
Region11q23.1
Chromosome idchr11
Chromosome position110870290
Reported geneNR
Mapped geneHNRNPA1P60 - LOC105369488
Upstream gene id120364
Downstream gene id105369488
SNP gene ids
Upstream gene distance81221
Downstream gene distance51717
SNP risk allelers1469170-A
SNPsrs1469170
Merged0
SNP id current1469170
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta1.2
%95 Ci[1.12-1.29]
PlatformIllumina [1300000] (imputed)
CNVN
Mapped traitmalaria
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001068
Study accessionGCST002033