SNP Detail For rs146696563
1.Mapping Information
Human SNP ID rs146696563
Human chromosome chr6
Human SNP position 24062560
Pig chromosome chr7
Pig SNP position 20102078
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
Region6p22.3
Chromosome idchr6
Chromosome position24062560
Reported geneNRSN1
Mapped geneLOC100128365 - NRSN1
Upstream gene id100128365
Downstream gene id140767
SNP gene ids
Upstream gene distance89209
Downstream gene distance63626
SNP risk allelers146696563-T
SNPsrs146696563
Merged0
SNP id current146696563
Contextintergenic_variant
Intergenic1
Allele frequency0.99
P value0.000004
Pvalue mlog5.39794000867203
P value text(Age 20-60 years)
Or beta0.2396
%95 Ci[0.14-0.34] unit increase
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127