Human SNP ID | rs146696563 |
---|---|
Human chromosome | chr6 |
Human SNP position | 24062560 |
Pig chromosome | chr7 |
Pig SNP position | 20102078 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (Mean PAL) |
Initial sample | up to 4,032 European ancestry individuals |
Replication sample | NA |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 24062560 |
Reported gene | NRSN1 |
Mapped gene | LOC100128365 - NRSN1 |
Upstream gene id | 100128365 |
Downstream gene id | 140767 |
SNP gene ids | |
Upstream gene distance | 89209 |
Downstream gene distance | 63626 |
SNP risk allele | rs146696563-T |
SNPs | rs146696563 |
Merged | 0 |
SNP id current | 146696563 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.99 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Age 20-60 years) |
Or beta | 0.2396 |
%95 Ci | [0.14-0.34] unit increase |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002127 |