SNP Detail For rs146680296
1.Mapping Information
Human SNP ID rs146680296
Human chromosome chr16
Human SNP position 60676568
Pig chromosome chr6
Pig SNP position 20447677
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region16q21
Chromosome idchr16
Chromosome position60676568
Reported geneIntergenic
Mapped geneGNPATP - LOC107984812
Upstream gene id100130060
Downstream gene id107984812
SNP gene ids
Upstream gene distance20594
Downstream gene distance68956
SNP risk allelers146680296-G
SNPsrs146680296
Merged0
SNP id current146680296
Contextintergenic_variant
Intergenic1
Allele frequency0.999
P value0.0000001
Pvalue mlog7
P value text(AA)
Or beta0.379
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264