Human SNP ID | rs146680296 |
---|---|
Human chromosome | chr16 |
Human SNP position | 60676568 |
Pig chromosome | chr6 |
Pig SNP position | 20447677 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 16q21 |
Chromosome id | chr16 |
Chromosome position | 60676568 |
Reported gene | Intergenic |
Mapped gene | GNPATP - LOC107984812 |
Upstream gene id | 100130060 |
Downstream gene id | 107984812 |
SNP gene ids | |
Upstream gene distance | 20594 |
Downstream gene distance | 68956 |
SNP risk allele | rs146680296-G |
SNPs | rs146680296 |
Merged | 0 |
SNP id current | 146680296 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.999 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (AA) |
Or beta | 0.379 |
%95 Ci | unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003264 |