SNP Detail For rs1465639
1.Mapping Information
Human SNP ID rs1465639
Human chromosome chr2
Human SNP position 105822725
Pig chromosome chr3
Pig SNP position 51420883
2.Annotation Information
PubMed ID23533358
JournalScientificWorldJournal
Linkwww.ncbi.nlm.nih.gov/pubmed/23533358
StudyNCK2 is significantly associated with opiates addiction in African-origin men.
Disease/TraitAddiction
Initial sample1,393 European ancestry females, 1,131 European ancestry males, 568 African ancestry females, 535 African ancestry males
Replication sampleNA
Region2q12.2, 1q32.1
Chromosome idchr2;1;2;2;2;2;2;2;2;2;2;2;2;2
Chromosome position105820800;204858913;105815399;105817021;105840835;105837629;105822480;105822725;105841192;105826655;105819909;105823603;105828825;105839093
Reported geneNCK2
Mapped geneNCK2; NFASC; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers4851870-C; rs12043259-A; rs6747023-G; rs7589342-T; rs2377339-G; rs7589561-T; rs1465641-A; rs1465639-G; rs2163349-T; rs12995849-T; rs12995333-T; rs6741172-A; rs2163350-C; rs4851095-C
SNPsrs4851870; rs12043259; rs6747023; rs7589342; rs2377339; rs7589561; rs1465641; rs1465639; rs2163349; rs12995849; rs12995333; rs6741172; rs2163350; rs4851095
Merged0
SNP id current
Contextintron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.00000000002
Pvalue mlog10.698970004336
P value text(Opiates)
Or beta
%95 Ci
PlatformIllumina [859185]
CNVN
Mapped traitdrug dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003890
Study accessionGCST001880