Human SNP ID | rs1465639 |
---|---|
Human chromosome | chr2 |
Human SNP position | 105822725 |
Pig chromosome | chr3 |
Pig SNP position | 51420883 |
PubMed ID | 23533358 |
---|---|
Journal | ScientificWorldJournal |
Link | www.ncbi.nlm.nih.gov/pubmed/23533358 |
Study | NCK2 is significantly associated with opiates addiction in African-origin men. |
Disease/Trait | Addiction |
Initial sample | 1,393 European ancestry females, 1,131 European ancestry males, 568 African ancestry females, 535 African ancestry males |
Replication sample | NA |
Region | 2q12.2, 1q32.1 |
Chromosome id | chr2;1;2;2;2;2;2;2;2;2;2;2;2;2 |
Chromosome position | 105820800;204858913;105815399;105817021;105840835;105837629;105822480;105822725;105841192;105826655;105819909;105823603;105828825;105839093 |
Reported gene | NCK2 |
Mapped gene | NCK2; NFASC; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2; NCK2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4851870-C; rs12043259-A; rs6747023-G; rs7589342-T; rs2377339-G; rs7589561-T; rs1465641-A; rs1465639-G; rs2163349-T; rs12995849-T; rs12995333-T; rs6741172-A; rs2163350-C; rs4851095-C |
SNPs | rs4851870; rs12043259; rs6747023; rs7589342; rs2377339; rs7589561; rs1465641; rs1465639; rs2163349; rs12995849; rs12995333; rs6741172; rs2163350; rs4851095 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant; intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | (Opiates) |
Or beta | |
%95 Ci | |
Platform | Illumina [859185] |
CNV | N |
Mapped trait | drug dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003890 |
Study accession | GCST001880 |