Human SNP ID | rs1463525 |
---|---|
Human chromosome | chr3 |
Human SNP position | 175243598 |
Pig chromosome | chr13 |
Pig SNP position | 122415926 |
PubMed ID | 21408207 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21408207 |
Study | Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls |
Replication sample | NA |
Region | 3q26.31 |
Chromosome id | chr3 |
Chromosome position | 175243598 |
Reported gene | NAALADL2 |
Mapped gene | NAALADL2-AS2, NAALADL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100874244, 254827 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1463525-? |
SNPs | rs1463525 |
Merged | 0 |
SNP id current | 1463525 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.43 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (case-only) |
Or beta | 1.37 |
%95 Ci | [1.19-1.59] |
Platform | Illumina [421318] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000996 |