SNP Detail For rs1460676
1.Mapping Information
Human SNP ID rs1460676
Human chromosome chr2
Human SNP position 163711179
Pig chromosome chr15
Pig SNP position 78202636
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region2q24.3
Chromosome idchr2
Chromosome position163711179
Reported geneFIGN
Mapped geneFIGN
Upstream gene id
Downstream gene id
SNP gene ids55137
Upstream gene distance
Downstream gene distance
SNP risk allelers1460676-C
SNPsrs1460676
Merged0
SNP id current1460676
Contextintron_variant
Intergenic0
Allele frequency0.173
P value0.0000009
Pvalue mlog6.04575749056067
P value text(EA)
Or beta0.02
%95 Ci[0.012-0.028] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region2q24.3
Chromosome idchr2
Chromosome position163711179
Reported geneFIGN
Mapped geneFIGN
Upstream gene id
Downstream gene id
SNP gene ids55137
Upstream gene distance
Downstream gene distance
SNP risk allelers1460676-C
SNPsrs1460676
Merged0
SNP id current1460676
Contextintron_variant
Intergenic0
Allele frequency0.179
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta0.021
%95 Ci[0.013-0.028] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783