SNP Detail For rs1456315
1.Mapping Information
Human SNP ID rs1456315
Human chromosome chr8
Human SNP position 127091692
Pig chromosome chr4
Pig SNP position 13352662
2.Annotation Information
PubMed ID20676098
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20676098
StudyGenome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.
Disease/TraitProstate cancer
Initial sample1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls
Replication sample3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position127091692
Reported geneintergenic
Mapped genePRNCR1
Upstream gene id
Downstream gene id
SNP gene ids101867536
Upstream gene distance
Downstream gene distance
SNP risk allelers1456315-?
SNPsrs1456315
Merged0
SNP id current1456315
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value2E-29
Pvalue mlog28.698970004336
P value text
Or beta
%95 Ci
PlatformIllumina [510687]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST000750
PubMed ID23023329
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23023329
StudyGenome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.
Disease/TraitProstate cancer
Initial sample1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls
Replication sample3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position127091692
Reported geneintergenic
Mapped genePRNCR1
Upstream gene id
Downstream gene id
SNP gene ids101867536
Upstream gene distance
Downstream gene distance
SNP risk allelers1456315-?
SNPsrs1456315
Merged0
SNP id current1456315
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000000000001
Pvalue mlog12
P value text
Or beta
%95 Ci
PlatformIllumina [587294]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001702