Human SNP ID | rs1456315 |
---|---|
Human chromosome | chr8 |
Human SNP position | 127091692 |
Pig chromosome | chr4 |
Pig SNP position | 13352662 |
PubMed ID | 20676098 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20676098 |
Study | Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population. |
Disease/Trait | Prostate cancer |
Initial sample | 1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls |
Replication sample | 3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127091692 |
Reported gene | intergenic |
Mapped gene | PRNCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101867536 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1456315-? |
SNPs | rs1456315 |
Merged | 0 |
SNP id current | 1456315 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 2E-29 |
Pvalue mlog | 28.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [510687] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST000750 |
PubMed ID | 23023329 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23023329 |
Study | Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4. |
Disease/Trait | Prostate cancer |
Initial sample | 1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls |
Replication sample | 3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127091692 |
Reported gene | intergenic |
Mapped gene | PRNCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101867536 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1456315-? |
SNPs | rs1456315 |
Merged | 0 |
SNP id current | 1456315 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [587294] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001702 |