SNP Detail For rs1454292
1.Mapping Information
Human SNP ID rs1454292
Human chromosome chr8
Human SNP position 5068943
Pig chromosome chr15
Pig SNP position 41218984
2.Annotation Information
PubMed ID19896111
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19896111
StudyCommon variants in the trichohyalin gene are associated with straight hair in Europeans.
Disease/TraitHair morphology
Initial sample4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals
Replication sampleNA
Region8p23.2
Chromosome idchr8
Chromosome position5068943
Reported geneAC019176.2
Mapped geneCSMD1 - RSL24D1P7
Upstream gene id64478
Downstream gene id100129861
SNP gene ids
Upstream gene distance74137
Downstream gene distance2346
SNP risk allelers1454292-T
SNPsrs1454292
Merged0
SNP id current1454292
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformIllumina [~ 1000000] (imputed)
CNVN
Mapped traithair morphology
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005038
Study accessionGCST000519