SNP Detail For rs144704329
1.Mapping Information
Human SNP ID rs144704329
Human chromosome chr5
Human SNP position 84778474
Pig chromosome chr2
Pig SNP position 95091246
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q14.3
Chromosome idchr5
Chromosome position84778474
Reported geneNR
Mapped geneLOC105379060 - LOC100289244
Upstream gene id105379060
Downstream gene id100289244
SNP gene ids
Upstream gene distance172661
Downstream gene distance221144
SNP risk allelers144704329-?
SNPsrs144704329
Merged
SNP id current144704329
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(Latino)
Or beta1.5768
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956