SNP Detail For rs1444250
1.Mapping Information
Human SNP ID rs1444250
Human chromosome chr12
Human SNP position 62107393
Pig chromosome chr5
Pig SNP position 29272220
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region12q14.1
Chromosome idchr12
Chromosome position62107393
Reported geneFAM19A2
Mapped geneFAM19A2
Upstream gene id
Downstream gene id
SNP gene ids338811
Upstream gene distance
Downstream gene distance
SNP risk allelers1444250-T
SNPsrs1444250
Merged0
SNP id current1444250
Contextintron_variant
Intergenic0
Allele frequency0.859
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.039
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265