SNP Detail For rs1436900
1.Mapping Information
Human SNP ID rs1436900
Human chromosome chr1
Human SNP position 216885137
Pig chromosome chr10
Pig SNP position 9082072
2.Annotation Information
PubMed ID20395239
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20395239
StudyGenome-wide association identifies ATOH7 as a major gene determining human optic disc size.
Disease/TraitOptic nerve measurement (cup area)
Initial sample1,368 European ancestry twins from 666 families
Replication sample848 European ancestry twins from 531 families
Region1q41
Chromosome idchr1
Chromosome position216885137
Reported geneESRRG
Mapped geneESRRG
Upstream gene id
Downstream gene id
SNP gene ids2104
Upstream gene distance
Downstream gene distance
SNP risk allelers1436900-T
SNPsrs1436900
Merged0
SNP id current1436900
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.142
%95 Ci[0.058-0.226] unit decrease
PlatformIllumina [~ 2740000] (imputed)
CNVN
Mapped traitoptic disc size measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004832
Study accessionGCST000659