Human SNP ID | rs1432295 |
---|---|
Human chromosome | chr2 |
Human SNP position | 60839531 |
Pig chromosome | chr3 |
Pig SNP position | 85046176 |
PubMed ID | 21037568 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21037568 |
Study | A genome-wide association study of Hodgkin__s lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3). |
Disease/Trait | Hodgkin__s lymphoma |
Initial sample | 589 European ancestry cases, 5,199 European ancestry controls |
Replication sample | 2,057 European ancestry cases, 3,416 European ancestry controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 60839531 |
Reported gene | REL |
Mapped gene | PAPOLG - LINC01185 |
Upstream gene id | 64895 |
Downstream gene id | 400957 |
SNP gene ids | |
Upstream gene distance | 37445 |
Downstream gene distance | 8229 |
SNP risk allele | rs1432295-G |
SNPs | rs1432295 |
Merged | 0 |
SNP id current | 1432295 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.4 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.14-1.30] |
Platform | Illumina [504374] |
CNV | N |
Mapped trait | Hodgkins lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000183 |
Study accession | GCST000851 |
PubMed ID | 24149102 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/24149102 |
Study | Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin__s lymphoma. |
Disease/Trait | Hodgkin__s lymphoma |
Initial sample | 1,465 European ancestry cases, 6,417 European ancestry controls |
Replication sample | 1,071 European ancestry cases, 953 cases, 1,853 controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 60839531 |
Reported gene | NR |
Mapped gene | PAPOLG - LINC01185 |
Upstream gene id | 64895 |
Downstream gene id | 400957 |
SNP gene ids | |
Upstream gene distance | 37445 |
Downstream gene distance | 8229 |
SNP risk allele | rs1432295-G |
SNPs | rs1432295 |
Merged | 0 |
SNP id current | 1432295 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.4 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.24 |
%95 Ci | [NR] |
Platform | Illumina [296129] |
CNV | N |
Mapped trait | Hodgkins lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000183 |
Study accession | GCST002237 |