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SNP Detail For rs143200770
1.Mapping Information
| Human SNP ID | rs143200770 |
|---|---|
| Human chromosome | chr4 |
| Human SNP position | 166810737 |
| Pig chromosome | chr14 |
| Pig SNP position | 23451056 |
2.Annotation Information
| PubMed ID | 25839716 |
|---|---|
| Journal | Environ Res |
| Link | www.ncbi.nlm.nih.gov/pubmed/25839716 |
| Study | Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample. |
| Disease/Trait | Polychlorinated biphenyl levels |
| Initial sample | 922 European ancestry individuals |
| Replication sample | NA |
| Region | 4q32.3 |
| Chromosome id | chr4 |
| Chromosome position | 166810737 |
| Reported gene | NR |
| Mapped gene | SPOCK3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 50859 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs143200770-? |
| SNPs | rs143200770 |
| Merged | 0 |
| SNP id current | 143200770 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | |
| P value | 0.0000003 |
| Pvalue mlog | 6.52287874528033 |
| P value text | (PCB138) |
| Or beta | 0.95 |
| %95 Ci | [0.6-1.3] unit decrease |
| Platform | Illumina [8736858] (imputed) |
| CNV | N |
| Mapped trait | polychlorinated biphenyls measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007042 |
| Study accession | GCST002839 |
| PubMed ID | 25839716 |
| Journal | Environ Res |
| Link | www.ncbi.nlm.nih.gov/pubmed/25839716 |
| Study | Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample. |
| Disease/Trait | Polychlorinated biphenyl levels |
| Initial sample | 922 European ancestry individuals |
| Replication sample | NA |
| Region | 4q32.3 |
| Chromosome id | chr4 |
| Chromosome position | 166810737 |
| Reported gene | NR |
| Mapped gene | SPOCK3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 50859 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs143200770-? |
| SNPs | rs143200770 |
| Merged | 0 |
| SNP id current | 143200770 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | |
| P value | 0.0000008 |
| Pvalue mlog | 6.09691001300805 |
| P value text | (PCB99) |
| Or beta | 0.96 |
| %95 Ci | [0.59-1.33] unit decrease |
| Platform | Illumina [8736858] (imputed) |
| CNV | N |
| Mapped trait | polychlorinated biphenyls measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007042 |
| Study accession | GCST002839 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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