Human SNP ID | rs142850025 |
---|---|
Human chromosome | chr11 |
Human SNP position | 42717173 |
Pig chromosome | chr2 |
Pig SNP position | 21135093 |
PubMed ID | 24951543 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24951543 |
Study | Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract. |
Disease/Trait | Age-related nuclear cataracts |
Initial sample | 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals |
Replication sample | NA |
Region | 11p12 |
Chromosome id | chr11 |
Chromosome position | 42717173 |
Reported gene | intergenic |
Mapped gene | LOC105376642 - HNRNPKP3 |
Upstream gene id | 105376642 |
Downstream gene id | 399881 |
SNP gene ids | |
Upstream gene distance | 455242 |
Downstream gene distance | 544331 |
SNP risk allele | rs142850025-G |
SNPs | rs142850025 |
Merged | 0 |
SNP id current | 142850025 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Fixed effect) |
Or beta | 0.19 |
%95 Ci | [0.11-0.27] unit decrease |
Platform | Illumina [4736131] (imputed) |
CNV | N |
Mapped trait | age-related nuclear cataract |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0011142 |
Study accession | GCST002498 |