Human SNP ID | rs1426153 |
---|---|
Human chromosome | chr11 |
Human SNP position | 125300743 |
Pig chromosome | chr9 |
Pig SNP position | 58070404 |
PubMed ID | 22488850 |
---|---|
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22488850 |
Study | Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. |
Disease/Trait | Alcohol and nictotine co-dependence |
Initial sample | 818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls |
Replication sample | NA |
Region | 11q24.2 |
Chromosome id | chr11 |
Chromosome position | 125300743 |
Reported gene | PKNOX2 |
Mapped gene | PKNOX2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63876 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1426153-? |
SNPs | rs1426153 |
Merged | 0 |
SNP id current | 1426153 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [805814] |
CNV | N |
Mapped trait | alcohol and nicotine codependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004776 |
Study accession | GCST001471 |