Human SNP ID | rs1424760 |
---|---|
Human chromosome | chr2 |
Human SNP position | 162925277 |
Pig chromosome | chr15 |
Pig SNP position | 77418428 |
PubMed ID | 22359512 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22359512 |
Study | Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 4,034 European ancestry individuals |
Replication sample | NA |
Region | 2q24.3 |
Chromosome id | chr2 |
Chromosome position | 162925277 |
Reported gene | KCNH7 |
Mapped gene | LOC105373725 - RPL7P61 |
Upstream gene id | 105373725 |
Downstream gene id | 101929589 |
SNP gene ids | |
Upstream gene distance | 70505 |
Downstream gene distance | 226948 |
SNP risk allele | rs1424760-? |
SNPs | rs1424760 |
Merged | 0 |
SNP id current | 1424760 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (proportions) |
Or beta | 0.7 |
%95 Ci | [NR] % increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001414 |