SNP Detail For rs142412198
1.Mapping Information
Human SNP ID rs142412198
Human chromosome chr2
Human SNP position 122343972
Pig chromosome chr15
Pig SNP position 33896312
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region2q14.3
Chromosome idchr2
Chromosome position122343972
Reported geneIntergenic
Mapped geneLOC105373592
Upstream gene id
Downstream gene id
SNP gene ids105373592
Upstream gene distance
Downstream gene distance
SNP risk allelers142412198-A
SNPsrs142412198
Merged0
SNP id current142412198
Contextintergenic_variant
Intergenic0
Allele frequency0.998
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.388
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265