Human SNP ID | rs1423386 |
---|---|
Human chromosome | chr5 |
Human SNP position | 62689026 |
Pig chromosome | chr16 |
Pig SNP position | 44323797 |
PubMed ID | 23509962 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23509962 |
Study | A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. |
Disease/Trait | Venous thromboembolism (SNP x SNP interaction) |
Initial sample | 411 European ancestry cases, 1,228 European ancestry controls |
Replication sample | 1,542 European ancestry cases, 1,110 European ancestry controls |
Region | 13q33.1 x 5q12.1 |
Chromosome id | chr13 x 5 |
Chromosome position | 102312653 x 62689026 |
Reported gene | NR x NR |
Mapped gene | FGF14, FGF14-IT1 x IPO11 - ISCA1P1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1336708-? x rs1423386-? |
SNPs | rs1336708 x rs1423386 |
Merged | 0 |
SNP id current | |
Context | intron_variant x intergenic_variant |
Intergenic | |
Allele frequency | |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 1.7241 |
%95 Ci | [NR] |
Platform | Illumina [291872] |
CNV | N |
Mapped trait | venous thromboembolism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004286 |
Study accession | GCST001913 |
PubMed ID | 23509962 |
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23509962 |
Study | A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. |
Disease/Trait | Venous thromboembolism (SNP x SNP interaction) |
Initial sample | 411 European ancestry cases, 1,228 European ancestry controls |
Replication sample | 1,542 European ancestry cases, 1,110 European ancestry controls |
Region | 5q12.1 x 13q33.1 |
Chromosome id | chr5 x 13 |
Chromosome position | 62689026 x 102278224 |
Reported gene | NR x NR |
Mapped gene | IPO11 - ISCA1P1 x FGF14 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1423386-G x rs6491679-G |
SNPs | rs1423386 x rs6491679 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant x intron_variant |
Intergenic | |
Allele frequency | |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.73 |
%95 Ci | [NR] |
Platform | Illumina [291872] |
CNV | N |
Mapped trait | venous thromboembolism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004286 |
Study accession | GCST001913 |