SNP Detail For rs1423386
1.Mapping Information
Human SNP ID rs1423386
Human chromosome chr5
Human SNP position 62689026
Pig chromosome chr16
Pig SNP position 44323797
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region13q33.1 x 5q12.1
Chromosome idchr13 x 5
Chromosome position102312653 x 62689026
Reported geneNR x NR
Mapped geneFGF14, FGF14-IT1 x IPO11 - ISCA1P1
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers1336708-? x rs1423386-?
SNPsrs1336708 x rs1423386
Merged0
SNP id current
Contextintron_variant x intergenic_variant
Intergenic
Allele frequency
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.7241
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region5q12.1 x 13q33.1
Chromosome idchr5 x 13
Chromosome position62689026 x 102278224
Reported geneNR x NR
Mapped geneIPO11 - ISCA1P1 x FGF14
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers1423386-G x rs6491679-G
SNPsrs1423386 x rs6491679
Merged0
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequency
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.73
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913