Human SNP ID | rs1421898 |
---|---|
Human chromosome | chr5 |
Human SNP position | 158684065 |
Pig chromosome | chr16 |
Pig SNP position | 70571308 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Inflammatory skin disease |
Initial sample | 2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls |
Replication sample | NA |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 158684065 |
Reported gene | EBF1 |
Mapped gene | LOC105377681 - EBF1 |
Upstream gene id | 105377681 |
Downstream gene id | 1879 |
SNP gene ids | |
Upstream gene distance | 168985 |
Downstream gene distance | 11843 |
SNP risk allele | rs1421898-? |
SNPs | rs1421898 |
Merged | 0 |
SNP id current | 1421898 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Psoriasis) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 5200000] |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002740 |