SNP Detail For rs1421898
1.Mapping Information
Human SNP ID rs1421898
Human chromosome chr5
Human SNP position 158684065
Pig chromosome chr16
Pig SNP position 70571308
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region5q33.3
Chromosome idchr5
Chromosome position158684065
Reported geneEBF1
Mapped geneLOC105377681 - EBF1
Upstream gene id105377681
Downstream gene id1879
SNP gene ids
Upstream gene distance168985
Downstream gene distance11843
SNP risk allelers1421898-?
SNPsrs1421898
Merged0
SNP id current1421898
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Psoriasis)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740