SNP Detail For rs142015091
1.Mapping Information
Human SNP ID rs142015091
Human chromosome chr9
Human SNP position 10530738
Pig chromosome chr1
Pig SNP position 236242032
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region9p23
Chromosome idchr9
Chromosome position10530738
Reported genePTPRD
Mapped genePTPRD
Upstream gene id
Downstream gene id
SNP gene ids5789
Upstream gene distance
Downstream gene distance
SNP risk allelers142015091-C
SNPsrs142015091
Merged0
SNP id current142015091
Contextintron_variant
Intergenic0
Allele frequency0.996
P value0.000005
Pvalue mlog5.30102999566398
P value text(AA)
Or beta0.288
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265