SNP Detail For rs1417437
1.Mapping Information
Human SNP ID rs1417437
Human chromosome chr1
Human SNP position 69688758
Pig chromosome chr6
Pig SNP position 132691161
2.Annotation Information
PubMed ID22419666
JournalAm J Med Genet A
Linkwww.ncbi.nlm.nih.gov/pubmed/22419666
StudyGenome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.
Disease/TraitOrofacial clefts
Initial sample1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position69688758
Reported geneLRRC7
Mapped geneLRRC7
Upstream gene id
Downstream gene id
SNP gene ids57554
Upstream gene distance
Downstream gene distance
SNP risk allelers1417437-?
SNPsrs1417437
Merged0
SNP id current1417437
Contextintron_variant
Intergenic0
Allele frequency0.65
P value0.000009
Pvalue mlog5.04575749056067
P value text(CL_CLP)
Or beta1.25
%95 Ci[1.37-1.14]
PlatformIllumina [NR]
CNVN
Mapped traitOrofacial clefting syndrome
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_139039
Study accessionGCST001442
PubMed ID22419666
JournalAm J Med Genet A
Linkwww.ncbi.nlm.nih.gov/pubmed/22419666
StudyGenome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.
Disease/TraitOrofacial clefts
Initial sample1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position69688758
Reported geneLRRC7
Mapped geneLRRC7
Upstream gene id
Downstream gene id
SNP gene ids57554
Upstream gene distance
Downstream gene distance
SNP risk allelers1417437-?
SNPsrs1417437
Merged0
SNP id current1417437
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.000004
Pvalue mlog5.39794000867203
P value text(CLP)
Or beta1.3
%95 Ci[1.47-1.16]
PlatformIllumina [NR]
CNVN
Mapped traitOrofacial clefting syndrome
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_139039
Study accessionGCST001442