Human SNP ID | rs1417437 |
---|---|
Human chromosome | chr1 |
Human SNP position | 69688758 |
Pig chromosome | chr6 |
Pig SNP position | 132691161 |
PubMed ID | 22419666 |
---|---|
Journal | Am J Med Genet A |
Link | www.ncbi.nlm.nih.gov/pubmed/22419666 |
Study | Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts. |
Disease/Trait | Orofacial clefts |
Initial sample | 1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads |
Replication sample | NA |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 69688758 |
Reported gene | LRRC7 |
Mapped gene | LRRC7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57554 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1417437-? |
SNPs | rs1417437 |
Merged | 0 |
SNP id current | 1417437 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.65 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (CL_CLP) |
Or beta | 1.25 |
%95 Ci | [1.37-1.14] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | Orofacial clefting syndrome |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_139039 |
Study accession | GCST001442 |
PubMed ID | 22419666 |
Journal | Am J Med Genet A |
Link | www.ncbi.nlm.nih.gov/pubmed/22419666 |
Study | Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts. |
Disease/Trait | Orofacial clefts |
Initial sample | 1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads |
Replication sample | NA |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 69688758 |
Reported gene | LRRC7 |
Mapped gene | LRRC7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57554 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1417437-? |
SNPs | rs1417437 |
Merged | 0 |
SNP id current | 1417437 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.64 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (CLP) |
Or beta | 1.3 |
%95 Ci | [1.47-1.16] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | Orofacial clefting syndrome |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_139039 |
Study accession | GCST001442 |