Human SNP ID | rs1415701 |
---|---|
Human chromosome | chr6 |
Human SNP position | 130024690 |
Pig chromosome | chr1 |
Pig SNP position | 36855180 |
PubMed ID | 23563607 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Height |
Initial sample | 8,097 European ancestry tall individuals, 8,099 European ancestry short individuals |
Replication sample | 4,872 European ancestry tall individuals, 4,831 European ancestry short individuals |
Region | 6q23.1 |
Chromosome id | chr6 |
Chromosome position | 130024690 |
Reported gene | L3MBTL3 |
Mapped gene | L3MBTL3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84456 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1415701-G |
SNPs | rs1415701 |
Merged | 0 |
SNP id current | 1415701 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.73 |
P value | 0.0000000000005 |
Pvalue mlog | 12.3010299956639 |
P value text | |
Or beta | 1.19 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST001956 |
PubMed ID | 25429064 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25429064 |
Study | Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. |
Disease/Trait | Height |
Initial sample | 36,227 East Asian ancestry individuals |
Replication sample | 57,699 East Asian ancestry individuals |
Region | 6q23.1 |
Chromosome id | chr6 |
Chromosome position | 130024690 |
Reported gene | L3MBTL3 |
Mapped gene | L3MBTL3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84456 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1415701-A |
SNPs | rs1415701 |
Merged | 0 |
SNP id current | 1415701 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 1E-24 |
Pvalue mlog | 24 |
P value text | |
Or beta | 0.056 |
%95 Ci | [0.044-0.068] unit decrease |
Platform | Affymetrix, Illumina [2704730] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002702 |