SNP Detail For rs1415701
1.Mapping Information
Human SNP ID rs1415701
Human chromosome chr6
Human SNP position 130024690
Pig chromosome chr1
Pig SNP position 36855180
2.Annotation Information
PubMed ID23563607
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563607
StudyGenome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
Disease/TraitHeight
Initial sample8,097 European ancestry tall individuals, 8,099 European ancestry short individuals
Replication sample4,872 European ancestry tall individuals, 4,831 European ancestry short individuals
Region6q23.1
Chromosome idchr6
Chromosome position130024690
Reported geneL3MBTL3
Mapped geneL3MBTL3
Upstream gene id
Downstream gene id
SNP gene ids84456
Upstream gene distance
Downstream gene distance
SNP risk allelers1415701-G
SNPsrs1415701
Merged0
SNP id current1415701
Contextintron_variant
Intergenic0
Allele frequency0.73
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text
Or beta1.19
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2800000] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001956
PubMed ID25429064
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25429064
StudyMeta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.
Disease/TraitHeight
Initial sample36,227 East Asian ancestry individuals
Replication sample57,699 East Asian ancestry individuals
Region6q23.1
Chromosome idchr6
Chromosome position130024690
Reported geneL3MBTL3
Mapped geneL3MBTL3
Upstream gene id
Downstream gene id
SNP gene ids84456
Upstream gene distance
Downstream gene distance
SNP risk allelers1415701-A
SNPsrs1415701
Merged0
SNP id current1415701
Contextintron_variant
Intergenic0
Allele frequency0.39
P value1E-24
Pvalue mlog24
P value text
Or beta0.056
%95 Ci[0.044-0.068] unit decrease
PlatformAffymetrix, Illumina [2704730] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002702