SNP Detail For rs1414896
1.Mapping Information
Human SNP ID rs1414896
Human chromosome chr1
Human SNP position 95226754
Pig chromosome chr4
Pig SNP position 133944217
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (AST)
Initial sample236 European ancestry cases
Replication sampleNA
Region1p21.3
Chromosome idchr1
Chromosome position95226754
Reported geneintergenic
Mapped geneTMEM56-RWDD3, LOC101928118
Upstream gene id
Downstream gene id
SNP gene ids100527978, 101928118
Upstream gene distance
Downstream gene distance
SNP risk allelers1414896-G
SNPsrs1414896
Merged0
SNP id current1414896
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.26
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000767