Human SNP ID | rs1414896 |
---|---|
Human chromosome | chr1 |
Human SNP position | 95226754 |
Pig chromosome | chr4 |
Pig SNP position | 133944217 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (AST) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 1p21.3 |
Chromosome id | chr1 |
Chromosome position | 95226754 |
Reported gene | intergenic |
Mapped gene | TMEM56-RWDD3, LOC101928118 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100527978, 101928118 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1414896-G |
SNPs | rs1414896 |
Merged | 0 |
SNP id current | 1414896 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.26 |
%95 Ci | [NR] unit increase |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | non-alcoholic fatty liver disease, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST000767 |