Human SNP ID | rs1412829 |
---|---|
Human chromosome | chr9 |
Human SNP position | 22043927 |
Pig chromosome | chr1 |
Pig SNP position | 223928896 |
PubMed ID | 19578366 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19578366 |
Study | Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility. |
Disease/Trait | Glioma (high-grade) |
Initial sample | 692 European ancestry cases, 3,992 European ancestry controls |
Replication sample | 176 cases, 174 controls |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 22043927 |
Reported gene | intergenic |
Mapped gene | CDKN2B-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100048912 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1412829-C |
SNPs | rs1412829 |
Merged | 0 |
SNP id current | 1412829 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.42 |
%95 Ci | [1.27-1.58] |
Platform | Illumina [326506] |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST000440 |
PubMed ID | 20512145 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20512145 |
Study | A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci. |
Disease/Trait | Nasopharyngeal carcinoma |
Initial sample | 1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls |
Replication sample | 3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284 Chinese ancestry trios |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 22043927 |
Reported gene | CDKN2B, CDNK2A |
Mapped gene | CDKN2B-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100048912 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1412829-? |
SNPs | rs1412829 |
Merged | 0 |
SNP id current | 1412829 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.89 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.18-1.41] |
Platform | Illumina [464328] |
CNV | N |
Mapped trait | nasopharyngeal neoplasm |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004252 |
Study accession | GCST000687 |