SNP Detail For rs1412829
1.Mapping Information
Human SNP ID rs1412829
Human chromosome chr9
Human SNP position 22043927
Pig chromosome chr1
Pig SNP position 223928896
2.Annotation Information
PubMed ID19578366
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19578366
StudyVariants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.
Disease/TraitGlioma (high-grade)
Initial sample692 European ancestry cases, 3,992 European ancestry controls
Replication sample176 cases, 174 controls
Region9p21.3
Chromosome idchr9
Chromosome position22043927
Reported geneintergenic
Mapped geneCDKN2B-AS1
Upstream gene id
Downstream gene id
SNP gene ids100048912
Upstream gene distance
Downstream gene distance
SNP risk allelers1412829-C
SNPsrs1412829
Merged0
SNP id current1412829
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.42
%95 Ci[1.27-1.58]
PlatformIllumina [326506]
CNVN
Mapped traitcentral nervous system cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000326
Study accessionGCST000440
PubMed ID20512145
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20512145
StudyA genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.
Disease/TraitNasopharyngeal carcinoma
Initial sample1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls
Replication sample3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284 Chinese ancestry trios
Region9p21.3
Chromosome idchr9
Chromosome position22043927
Reported geneCDKN2B, CDNK2A
Mapped geneCDKN2B-AS1
Upstream gene id
Downstream gene id
SNP gene ids100048912
Upstream gene distance
Downstream gene distance
SNP risk allelers1412829-?
SNPsrs1412829
Merged0
SNP id current1412829
Contextintron_variant
Intergenic0
Allele frequency0.89
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.28
%95 Ci[1.18-1.41]
PlatformIllumina [464328]
CNVN
Mapped traitnasopharyngeal neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004252
Study accessionGCST000687