SNP Detail For rs1411916
1.Mapping Information
Human SNP ID rs1411916
Human chromosome chr9
Human SNP position 78325660
Pig chromosome chr1
Pig SNP position 257831292
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral fat
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region9q21.2
Chromosome idchr9
Chromosome position78325660
Reported genePSAT1
Mapped genePSAT1
Upstream gene id
Downstream gene id
SNP gene ids29968
Upstream gene distance
Downstream gene distance
SNP risk allelers1411916-A
SNPsrs1411916
Merged0
SNP id current1411916
Contextintron_variant
Intergenic0
Allele frequency0.11
P value0.000004
Pvalue mlog5.39794000867203
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765
Study accessionGCST001525