Human SNP ID | rs1411916 |
---|---|
Human chromosome | chr9 |
Human SNP position | 78325660 |
Pig chromosome | chr1 |
Pig SNP position | 257831292 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral fat |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 9q21.2 |
Chromosome id | chr9 |
Chromosome position | 78325660 |
Reported gene | PSAT1 |
Mapped gene | PSAT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 29968 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1411916-A |
SNPs | rs1411916 |
Merged | 0 |
SNP id current | 1411916 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.11 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (women) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004765 |
Study accession | GCST001525 |