SNP Detail For rs1407508
1.Mapping Information
Human SNP ID rs1407508
Human chromosome chr9
Human SNP position 98882256
Pig chromosome chr1
Pig SNP position 268905529
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in microsatellite instability low/stable colorectal cancer
Initial sample431 European ancestry cases
Replication sampleNA
Region9q22.33
Chromosome idchr9
Chromosome position98882256
Reported geneintergenic
Mapped geneLOC102724684 - COL15A1
Upstream gene id102724684
Downstream gene id1306
SNP gene ids
Upstream gene distance4921
Downstream gene distance61092
SNP risk allelers1407508-?
SNPsrs1407508
Merged0
SNP id current1407508
Contextregulatory_region_variant
Intergenic1
Allele frequency
P value0.0000009
Pvalue mlog6.04575749056067
P value text(disease-free survival)
Or beta2.53
%95 Ci[1.75-3.66]
PlatformIllumina [729737]
CNVN
Mapped traitdisease free survival, colorectal cancer, microsatellite instability measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054
Study accessionGCST002820