Human SNP ID | rs1407508 |
---|---|
Human chromosome | chr9 |
Human SNP position | 98882256 |
Pig chromosome | chr1 |
Pig SNP position | 268905529 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in microsatellite instability low/stable colorectal cancer |
Initial sample | 431 European ancestry cases |
Replication sample | NA |
Region | 9q22.33 |
Chromosome id | chr9 |
Chromosome position | 98882256 |
Reported gene | intergenic |
Mapped gene | LOC102724684 - COL15A1 |
Upstream gene id | 102724684 |
Downstream gene id | 1306 |
SNP gene ids | |
Upstream gene distance | 4921 |
Downstream gene distance | 61092 |
SNP risk allele | rs1407508-? |
SNPs | rs1407508 |
Merged | 0 |
SNP id current | 1407508 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (disease-free survival) |
Or beta | 2.53 |
%95 Ci | [1.75-3.66] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | disease free survival, colorectal cancer, microsatellite instability measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054 |
Study accession | GCST002820 |