SNP Detail For rs140659849
1.Mapping Information
Human SNP ID rs140659849
Human chromosome chrX
Human SNP position 50451939
Pig chromosome chrX
Pig SNP position 49084461
2.Annotation Information
PubMed ID26307654
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/26307654
StudyGenome-Wide Association Study of Prostate Cancer-Specific Survival.
Disease/TraitProstate cancer (survival)
Initial sample7,322 cases
Replication sample18,197 European ancestry cases
RegionXp11.22
Chromosome idchrX
Chromosome position50451939
Reported geneNR
Mapped geneDGKK
Upstream gene id
Downstream gene id
SNP gene ids139189
Upstream gene distance
Downstream gene distance
SNP risk allelers140659849-A
SNPsrs140659849
Merged
SNP id current140659849
Contextintron_variant
Intergenic0
Allele frequency0.01
P value0.0000001
Pvalue mlog7
P value text
Or beta2.61
%95 Ci[1.83-3.73]
PlatformAffymetrix, Illumina [up to 9536409] (imputed)
CNVN
Mapped traitsurvival time, prostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000714, http://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST003100