Human SNP ID | rs140659849 |
---|---|
Human chromosome | chrX |
Human SNP position | 50451939 |
Pig chromosome | chrX |
Pig SNP position | 49084461 |
PubMed ID | 26307654 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/26307654 |
Study | Genome-Wide Association Study of Prostate Cancer-Specific Survival. |
Disease/Trait | Prostate cancer (survival) |
Initial sample | 7,322 cases |
Replication sample | 18,197 European ancestry cases |
Region | Xp11.22 |
Chromosome id | chrX |
Chromosome position | 50451939 |
Reported gene | NR |
Mapped gene | DGKK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 139189 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs140659849-A |
SNPs | rs140659849 |
Merged | |
SNP id current | 140659849 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 2.61 |
%95 Ci | [1.83-3.73] |
Platform | Affymetrix, Illumina [up to 9536409] (imputed) |
CNV | N |
Mapped trait | survival time, prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000714, http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST003100 |