SNP Detail For rs140449984
1.Mapping Information
Human SNP ID rs140449984
Human chromosome chr18
Human SNP position 8321899
Pig chromosome chr6
Pig SNP position 92660795
2.Annotation Information
PubMed ID25865494
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25865494
StudyGenome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.
Disease/TraitSitting height ratio
Initial sample3,545 African Americans individuals, 12,965 European ancestry women, 8,625 European ancestry men
Replication sampleNA
Region18p11.23
Chromosome idchr18
Chromosome position8321899
Reported genePTPRM
Mapped genePTPRM
Upstream gene id
Downstream gene id
SNP gene ids5797
Upstream gene distance
Downstream gene distance
SNP risk allelers140449984-T
SNPsrs140449984
Merged0
SNP id current140449984
Contextintron_variant
Intergenic0
Allele frequency0.075
P value0.0000007
Pvalue mlog6.15490195998574
P value text(EA)
Or beta0.104
%95 Ci[0.067-0.141] unit decrease
PlatformAffymetrix, Illumina [up to 10250422] (imputed)
CNVN
Mapped traitsitting height ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007118
Study accessionGCST002843