SNP Detail For rs1402901
1.Mapping Information
Human SNP ID rs1402901
Human chromosome chr2
Human SNP position 53460592
Pig chromosome chr3
Pig SNP position 92863619
2.Annotation Information
PubMed ID24939585
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24939585
StudyGenome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.
Disease/TraitAge-related hearing impairment (interaction)
Initial sample1,489 European ancestry individuals
Replication sampleNA
Region2p16.2 x 3q13.13
Chromosome idchr2 x 3
Chromosome position53460592 x 111550389
Reported geneNR x NR
Mapped geneLOC105369165 - LOC105374600 x CD96
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers1402901-? x rs2173318-?
SNPsrs1402901 x rs2173318
Merged
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [629437] (imputed)
CNVN
Mapped traitage-related hearing impairment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005782
Study accessionGCST002487