SNP Detail For rs1401999
1.Mapping Information
Human SNP ID rs1401999
Human chromosome chr3
Human SNP position 183960554
Pig chromosome chr13
Pig SNP position 131336642
2.Annotation Information
PubMed ID24603532
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24603532
StudyABCC5, a gene that influences the anterior chamber depth, is associated with primary angle closure glaucoma.
Disease/TraitAnterior chamber depth
Initial sample1,752 Malay ancestry individuals, 1,860 Indian ancestry individuals, 872 Chinese ancestry individuals
Replication sample824 Chinese ancestry individuals
Region3q27.1
Chromosome idchr3
Chromosome position183960554
Reported geneHTR3D, HTR3C, ABCC5, PARL
Mapped geneABCC5
Upstream gene id
Downstream gene id
SNP gene ids10057
Upstream gene distance
Downstream gene distance
SNP risk allelers1401999-C
SNPsrs1401999
Merged0
SNP id current1401999
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.000000008
Pvalue mlog8.09691001300805
P value text
Or beta0.045
%95 Ci[0.030-0.060] unit decrease
PlatformIllumina [NR]
CNVN
Mapped traitanterior chamber depth measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005668
Study accessionGCST002383